Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs55849754 chr19:29279665 G/A 5.12E-5 114 50.1 38.13 18.07 KM Plot
THYM rs55912339 chr2:30655108 C/G 0 119 36.4 50.47 12.63 KM Plot
THYM rs55913045 chr17:73477562 C/T 0.000145 116 38.23 41.77 50.1 KM Plot
THYM rs55935416 chr4:9648989 C/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs55936246 chr9:97181201 C/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs55948575 chr4:9648084 G/A 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs55954663 chr7:45313612 T/C 2.28E-5 119 50.08 35 14.9 KM Plot
THYM rs55954711 chr9:97193798 C/CT 8.38E-5 118 41.22 40.43 17.03 KM Plot
THYM rs56011095 chr2:177466291 C/A 5.19E-6 118 41.77 45.38 25.83 KM Plot
THYM rs56018942 chr8:39049022 G/A 0.000316 117 35.13 50.08 34.72 KM Plot
THYM rs56097914 chr8:50183797 A/G 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs56101381 chr19:41272902 T/C 3.96E-13 117 42.9 34.87 6 KM Plot
THYM rs56113317 chr7:127122279 GAA/GA 3.98E-13 119 42.73 38.83 6 KM Plot
THYM rs56165201 chr9:97119755 G/A 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs56226042 chr7:843525 G/A 0.000116 114 46.6 22.5 25.47 KM Plot